Bioinformatics
Assemblers
PHRAP 2007 Assembling Genomic DNA Sequences with PHRAP Cold Spring Harbor Laboratory Current protocols in bioinformatics
Bioinformatics
SGS genome assembly Platform
2010 Sequencing technologies — the next generation Human Genome Sequencing Center and Department of Molecular & Human Genetics, Baylor College of Medicine Nature reviews Demand has never been greater for revolutionary technologies that deliver fast, inexpensive and accurate genome information. This challenge has catalysed the development of next-generation sequencing (NGS) technologies. The inexpensive production Read more…
Bioinformatics
Long reads genome assembly
https://github.com/isovic/racon https://github.com/PacificBiosciences/FALCON https://github.com/marbl/canu 2015 Assembling large genomes with single-molecule sequencing and locality-sensitive hashing Department of Chemistry and Biochemistry, University of Maryland Nature Biotechnology
Bioinformatics
BAUM – Improving Genome Assembly by Adaptive Unique Mapping and Local Overlap-Layout-Consensus
Download our soft from http://www.zhanyuwang.xin/BAUM/BAUMsoft.tar.gz (alternative download url: https://www.dropbox.com/s/7qzgb4035lln608/BAUMsoft.tar.gz) Abstract Motivation: It is highly desirable to assemble genomes of high continuity and consistency at low cost. The current bottleneck of draft genome continuity using the Second Generation Sequencing (SGS) reads is primarily caused by uncertainty among repetitive sequences. Even though the Read more…